
Guo-Cheng Yuan, PhD
About Me
Dr. Guo-Cheng Yuan is a Professor of Computational Biology at Icahn School of Medicine at Mount Sinai. He is also a faculty member of the Icahn Genomics Institute. Prior to his current appointment, he was an Associate Professor at Dana-Farber Cancer Institute/Harvard Medical School and a Principal Faculty member at Harvard Stem Cell Institute. He obtained B.S and M.A degrees in Mathematics from Peking University, and a PhD degree in Mathematics from University of Maryland, followed by postdoctoral training at Brown University. Dr. Yuan transitioned into a computational biologist by taking up a postdoctoral fellow position at Harvard University before joining Dana-Farber as a faculty member. Dr. Yuan’s group has developed a number of computational methods for analyzing and interpreting large-scale biological data. Notable examples include methods for epigenomics (Haystack, diHMM, CUT&RUNTools), for single-cell analysis (SCUBA, GiniClust, Giotto), and for genome-editing (CRISPResso). For over a decade, Dr. Yuan’s group has collaborated with basic scientists and cancer biologists to elucidate the gene regulatory mechanisms in development and diseases.
Language
English
Position
PROFESSOR | Genetics and Genomic Sciences, PROFESSOR | Immunology & Immunotherapy
Research Topics
Bioinformatics, Brain, Cancer, Chromatin, Computational Biology, Epigenomics, Gene Regulation, Genomics, Immunology, Systems Biology
Multi-Disciplinary Training Areas
Artificial Intelligence and Emerging Technologies in Medicine [AIET], Genetics and Genomic Sciences [GGS]
Education
PhD, University of Maryland
Postdoc, Harvard University
Research
Publications
Selected Publications
- ONTraC characterizes spatially continuous variations of tissue microenvironment through niche trajectory analysis. Wen Wang, Shiwei Zheng, Sujung Crystal Shin, Joselyn Cristina Chávez-Fuentes, Guo Cheng Yuan. Genome Biology
- A Robust Kernel-Based Workflow for Niche Trajectory Analysis. Wen Wang, Sujung Crystal Shin, Joselyn Cristina Chávez-Fuentes, Guo Cheng Yuan. Small Methods
- Protocol to boost the robustness and accuracy of spatial transcriptomics algorithms using ensemble techniques. Jiazhang Cai, Shushan Wu, Huimin Cheng, Wenxuan Zhong, Guo Cheng Yuan, Ping Ma. STAR Protocols